Peer-Reviewed:
| 27 |  | Will, I., Das, B., Trinh, T., Brachmann, A., Ohm, R.A., de Bekker, C. (2020): Genetic underpinnings of host manipulation by Ophiocordyceps as revealed by comparative transcriptomics. In: G3: Genes, Genomes, Genetics 10(7), 2275-2296 |
| 26 | | de Bekker, C. (2019): Ophiocordyceps-ant interactions as an integrative model to understand the molecular basis of parasitic behavioral manipulation. In: Curr. Opin. Insect Sci. 33, 19-24 |
| 25 | | Westwood, M.L., O’Donnell, A.J., de Bekker, C., Lively, C.M., Zuk, M., Reece, S.E. (2019): The evolutionary ecology of circadian rhythms in infection. In: Nat. Ecol. Evol. 3, 552–560 |
| 24 | | Andriolli, F.S., Ishikawa, N.K., Isla, R.V., Cabral, T.S., de Bekker, C., Baccaro, F.B. (2019): Do zombie ant fungi turn their hosts into light seekers? In: Behav. Ecol. 30(3), 609-616 |
| 23 | | de Bekker, C., Will, I., Das, B., Adams, R.M.M. (2018): The ants (Hymenoptera: Formicidae) and their parasites: effects of parasitic manipulations and host responses on ant behavioral ecology. In: Myrmecol. News 28: 1-24 |
| 22 | | Solá-Gracia, E., de Bekker, C., Russell, J., Manlove, K., Hanks, E., Hughes, D.P. (2018): Within the fortress: A specialized parasite is not discriminated against in a social insect society. In: PLoS ONE 13(2): e0193536 |
| 21 | | de Bekker, C., Will, I., Hughes, D.P., Brachmann, A., Merrow, M. (2017): Daily rhythms and enrichment patterns in the transcriptome of the behavior-manipulating parasite Ophiocordyceps kimflemingiae. In: PLoS ONE12(11): e0187170 |
| 20 | | Hughes, M.E., Abruzzi, K.C., Allada, R., Anafi, R., Arpat, A.B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M.F., Chen, Z., Chiu, J.C., Cox, J., Crowell, A.M., DeBruyne, J.P., Dijk, D.-J., DiTacchio, L., Doyle, F.j., Duffield, G.E., Dunlap, J.C., Eckel-Mahan, K., Esser, K.A., FitzGerald, G.A., Forger, D.B., Francey, L.J., Fu, Y.-H., Gachon, F., Gatfield, D., de Goede, P., Golden, S.S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M.H., Herzel, H., Herzog, E.D., Hoffmann, C., Hong, C., Hughey, J.J., Hurley, J.M., de la Iglesia, H.O., Johnson, C., Kay, S.A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S.A., Li, J., Li, X., Liu, A.C., Loros, J.J., Martino, T.A., Menet, J.S., Merrow, M., Millar, A.J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M.N., Olmedo, M., Nusinow, D.A., Ptáček, L.J., Rand, D., Reddy, A.B., Robles, M.S., Roenneberg, T., Rosbash, M., Ruben, M.D., Rund, S.S.C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D.J., Storch, K.-F., Takahashi, J.S., Ueda, H.R., Wang, H., Weitz, C., Westermark, P.O., Wijnen, H., Xu, Y., Wu, G., Yoo, S.-H., Young, M., Zhang, E.E., Zielinski, T., Hogenesch, J.B. (2017): Guidelines for Genome-Scale Analysis of Biological Rhythms In: Journal of Biological Rhythms xx(x):1-14 |
| 19 | | de Bekker, C., Ohm, R.A., Evans, H.C., Brachmann, A., Hughes, D.P. (2017): Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins. In: Scientific Reports 7(1):12508 |
| 18 | | Hughes, D.P., Araújo, J.P.M., Loreto R.G., Quevillon, L.E., de Bekker, C., Evans, H.C. (2016): From so simple a beginning: the evolution of behavioral manipulation by fungi. In: Advances in Genetics 94, 437-469 |
| 17 | | de Bekker, C., Ohm, R.A., Loreto, R.G., Sebastian, A., Albert, I., Merrow, M., Brachmann, A., Hughes, D.P. (2015): Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation. In: BMC Genomics 16:620 |
| 16 | | Chetouhi, C., Panek, J., Bonhomme, L., ElAlaoui, H., Texier, C., Langin, T., de Bekker, C., Urbach, S., Demettre, E., Missé, D., Holzmuller, P., Hughes, D.P., Zanzoni, A., Brun, C., Biron, D.G. (2015): Cross-talk in host-parasite associations: what do past and recent proteomics tools tell us? In: Infection, Genetics and Evolution DOI:10.1016/j.meegid.2015.04. |
| 15 | | Wang, F., Krijgsheld, P., Hulsman, M., de Bekker, C., Müller, W.H., Reinders, M., de Vries, R.P., Wösten, H.A.B. (2014): FluG affects secretion in colonies of Aspergillus niger. In: Antonie van Leeuwenhoek Journal of Microbiology 107(1), 225-240 |
| 14 | | de Bekker, C., Quevillon, L.E., Smith, P.B., Fleming, K.R., Ghosh, D., Patterson, A.D., Hughes, D.P. (2014): Species-specific ant brain manipulation by a specialized fungal parasite. In: BMC Evolutionary Biology 14:166 |
| 13 | | de Bekker, C., Merrow, M., Hughes, D.P. (2014): From behavior to mechanisms: An integrative approach to the manipulation by a parasitic fungus (Ophiocordyceps unilateralis s.l.) of its host ants (Camponotus spp.). In: Integrative and Comparative Biology 54(2), 166-176 |
| 12 | | de Bekker, C., Smith, P.B., Patterson, A.D., Hughes, D.P. (2013): Metabolomics reveals the heterogeneous response of entomopathogenic fungi in ex vivo cultured insect tissues. In: PLoS ONE 8(8):e70609 |
| 11 | | Wösten, H.A.B., van Veluw, G.J., de Bekker, C., Krijgsheld, P. (2013): Heterogeneity in the mycelium; implications for the use of fungi as cell factories. In: Biotechnology Letters 35, 1155-1164 |
| 10 | | van Veluw, G.J., Teertstra, W.R., de Bekker, C., Vinck, A., van Beek, N., Muller, W.H., Arentshorst, M., van der Mei. H.C., Ram, A.F.J., Dijksterhuis, J., Wösten, H.A.B. (2013): Heterogeneity in liquid shaken cultures of Aspergillus niger inoculated with melanised conidia of pigmentation mutants. In: Studies in Mycology 74(1), 47-57 |
| 9 | | de Bekker, C., Bruning, O., Jonker, M.J., Breit, T.M., Wösten, H.A.B. (2011): Single cell transcriptomics of neighboring hyphae of Aspergillus niger. In: Genome Biology 12:R71 |
| 8 | | Ohm, R.A., de Jong, J.F., de Bekker, C., Lugones, L.G., Wösten, H.A.B. (2011): Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation. In: Molecular Microbiology 81(6), 1433-1445 |
| 7 | | de Bekker, C., van Veluw, G.J., Vinck, A., Wiebenga, L.A., Wösten, H.A.B. (2011): Heterogeneity in Aspergillus niger micro-colonies in liquid shaken cultures. In: Applied and Environmental Microbiology 77(4), 1263-1267 |
| 6 | | de Bekker, C., Vinck, A., Ossin, A., Ohm, R.A., de Vries, R.P., Wösten, H.A.B. (2011): Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies. In: Environmental Microbiology 13(1), 216-225 |
| 5 | | de Jong, J.F., Ohm, R.A., de Bekker, C., Wösten, H.A.B., Lugones, L.G. (2010): Inactivation of ku80 in the mushroom forming fungus Schizophyllum commune decreases transformation efficiency and increases the relative incidence of homologous recombination. In: FEMS Microbiology Letters 310(1), 91-95 |
| 4 | | de Bekker, C., Wiebenga, A., Aguilar, G., Wösten, H.A.B. (2009): An enzyme cocktail for efficient protoplast formation in Aspergillus niger. In: Journal of Microbiological Methods 76(3), 305-306 |
| 3 | | van Peer, A.F., de Bekker, C., Vinck, A., Wösten, H.A.B., Lugones, L.G. (2009): Phleomycin increases transformation efficiency and promotes single integrations in Schizophyllum commune. In: Applied and Environmental Microbiology 75(5), 1243-1247 |
| 2 | | Levin, A.M., de Vries, R.P., Conesa, A., de Bekker, C., Talon, M., Menke, H.H., Van Peij, N.N.M.E., Wösten, H.A.B. (2007): Spatial differentiation in the vegetative mycelium of Aspergillus niger. In: Eukaryotic Cell 6(12), 2311-2322 |
| 1 | | Sivanathan, V., Allen, M.D., de Bekker, C., Baker, R., Arciszewska, L.K., Freund, S.M., Bycroft, M., Sherratt, D.J. (2006): The FtsK gamma domain directs oriented DNA translocation by interacting with KOPS. In: Nature Structural and Molecular Biology 13(11), 965-972 |
Other Written Contributions (Not Peer-Reviewed):
| 2 | | de Bekker, C. (2017): Manipulating fungi. (written in Dutch: “Manipulatieve schimmels.”) In: Schimmels. Van plaag tot bouwmeester. Biowetenschappen en Maatschappij, kwartaal 4, 35 |
| 1 | | de Bekker, C., van Veluw, G.J., & Bongaarts, R.(2009): Analysis and sorting of Aspergillus niger pellets based on size and fluorescence intensity measurements. In: COPAS QTN 015, 1-4 |